Assignment: GS 540 HW4
Name: Conor Camplisson
Email: concamp@uw.edu
Language: C++/Python
Runtime: 0m17.545s

Part 1
Score: 8
Begin: vi
End: ii
Path: ID

Part 2
Score: 4
Begin: vii
End: i
Path: LIDA

Part 3
Fasta: CP003508.fna
Non-alphabetic characters: 0
>gi|400273702|gb|CP003508.1| Mycoplasma gallisepticum NC96_1596-4-2P, complete genome
*=986257
A=337443
C=156212
G=155909
T=336693
N=0

Score: 11.07
Begin: 344420
End: 344444
Path: GGCGGCGGCCCCTGGCGATGGCCG
Description: This sequence lies within the HFMG96NCA_2038 gene (encodes a hypothetical protein).

Program:

int main() {
	do_analysis();
	return 0;
}