Assignment: GS 540 HW1
Name: Conor Camplisson
Email: concamp@uw.edu
Language: C++
Runtime: 8.08 sec

Fasta 1: CP001872.fna
Non-alphabetic characters: 851
>gi|284930242|gb|CP001872.1| Mycoplasma gallisepticum str. R(high), complete genome
*=1012027
A=349322
C=159094
G=159365
T=344246
N=0

Fasta 2: CP003913.fna
Non-alphabetic characters: 681
>gi|440453185|gb|CP003913.1| Mycoplasma pneumoniae M129-B7, complete genome
*=816373
A=249201
C=162924
G=163697
T=240551
N=0

Match Length Histogram:
1 1
2 1
3 1
4 1
5 1
6 1
7 696
8 21780
9 139804
10 299679
11 292645
12 160266
13 62582
14 21008
15 6701
16 2217
17 840
18 352
19 231
20 176
21 146
22 130
23 121
24 113
25 106
26 103
27 100
28 100
29 95
30 93
31 89
32 77
33 74
34 69
35 65
36 63
37 59
38 57
39 53
40 51
41 47
42 45
43 42
44 39
45 37
46 37
47 37
48 37
49 34
50 34
51 34
52 33
53 30
54 30
55 28
56 27
57 25
58 25
59 25
60 23
61 23
62 20
63 20
64 18
65 18
66 18
67 16
68 15
69 15
70 15
71 13
72 13
73 12
74 12
75 12
76 12
77 12
78 12
79 12
80 12
81 12
82 12
83 12
84 12
85 11
86 11
87 11
88 9
89 9
90 9
91 9
92 9
93 9
94 9
95 9
96 9
97 9
98 9
99 9
100 7
101 7
102 7
103 7
104 7
105 7
106 7
107 7
108 7
109 7
110 6
111 6
112 6
113 6
114 4
115 4
116 4
117 4
118 4
119 2
120 2
121 2
122 2

The longest match length: 122
Number of match strings: 1

Match string: GTCGGGTAAATTCCGTCCCGCTTGAATGGTGTAACCATCTCTTGACTGTCTCGGCTATAGACTCGGTGAAATCCAGGTACGGGTGAAGACACCCGTTAGGCGCAACGGGACGGAAAGACCCC
Description: This sequence comes from [look up entry in .gbff annotation file using the position information below]

Fasta: CP001872.fna
Position: 338240
Strand: forward

Fasta: CP001872.fna
Position: 82469
Strand: forward

Fasta: CP003913.fna
Position: 122005
Strand: forward


Program:

int main() {
	do_analysis();
	return 0;
}